PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009124410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 450aa    MW: 48928.9 Da    PI: 6.3841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009124410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.1e-07198218323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F+r  nL+ H+r H
  XP_009124410.1 198 CTICGKGFKRDANLRMHMRGH 218
                     *******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.032196223IPR007087Zinc finger, C2H2
SMARTSM003550.024196218IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.78E-5197219No hitNo description
Gene3DG3DSA:3.30.160.604.6E-5198218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SMARTSM0035550249282IPR015880Zinc finger, C2H2-like
SMARTSM0035545287309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
METGEDDLCQ NNWGSASILD YEMAMEDEEE GEPNLHVFKA SSSGKDNNNN NNGGQASVQG  60
VKAQAWDPRT MLCNLSFMEQ KIHELQGLVH LILGRNGQLQ DEQQQLITAD LTSIIIQLIS  120
TAGSLLPSVN MLSTTAPGSA LFPFPREANN LASQTLNNGG ASQELEDDAE EGENLPPGSY  180
EIKQLEKEEI LAPHTNFCTI CGKGFKRDAN LRMHMRGHGD QYKTPAALAK PPTKETLPGS  240
DAPMLIKRYS CPFPGCKRNK DHKRFQPLKT ILCVKNHYKR THCDKSFTCS RCHTKKFSVI  300
ADLKTHEKHC GQNKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPLEDTKP SAAASSQRGS  360
SGCGNSNNNA AMVSFSLGSA ANANQETSQP CVMDGKTSFE ESFSPLSFDI CNFGGFPRSI  420
FDDSFQMLIS SACGCSPING GVGSVSDTSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.6050.0bud| leaf| root| silique
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124410.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLM4FIP20.0M4FIP2_BRARP; Uncharacterized protein
STRINGBra040971.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein